Know the “normal” state for common organic atoms [3 rules to live by]

Structures of molecules can be difficult to piece together at first when you are just starting in an organic chemistry class. Hopefully you retained some of this knowledge from general chemistry. If not, one of the tricks that can greatly help with this is to know the uncharged or “normal” state for atoms that are commonly found in organic molecules.   Here is a table of the most common of those:

      – C has four bonds and no lone pairs

       – N has three bonds and one lone pair

       – Halogens (F, Cl, Br, I) have one bond and three lone pairs. 

       – O has two bonds and two lone pairs

       – H has one bond and no lone pairs

Three more rules:

–          C, N, O are central atoms, meaning that they will always be in the middle of your molecule.

–          H and halogens are terminal atoms, meaning that they will only have one bond and be at the ends of molecules.

–          With the exception of H, atoms in group I & group II are only counterions (+1 or +2 and not involved in resonance).

Remember, these rules are for when the atom is uncharged; this does not apply to charged atoms.  For example, a carbocation (a positively charged carbon atom) will have only three bonds with no lone pairs while a carbanion (a negatively charged carbon atom) wlll have three bonds with one lone pair, and a carbene will have two bonds with two lone pairs.

Notice that all of these carbons still follow the octet rule.  However, beware of atoms that do not follow the octet rule, as phosphorus is an example of an atom that can have more than an octet of electrons.  Shown below is triphenylphosphine oxide, a byproduct of the Wittig reaction.

Elements with open d-subshells, like phosphorous and sulfur, do not always follow the octet rule.  More examples of this are SF6 and PCl5.  However, carbon, nitrogen and oxygen will follow the octet rule.

free organic chem study guide

Dr. Mike Pali got a bachelors degree in chemistry from Binghamton University, a masters degree in organic chemistry from the University of Arizona and a Ph.D. in bio-organic chemistry from the University of Arizona. His research focus was on novel pain killers which were more potent than morphine but designed to have fewer side effects. There may even be a patent or two that came out of it. Prior to all of this, he was a chemist at Procter and Gamble. After all of that, he (briefly) worked as a post-doctoral assistant at Syracuse University, working on novel organic light-emitting diodes (OLEDs). In between, he did NOT compete at the 1996 Olympics, make the Atlanta Braves opening day roster, or become the head coach of the Indiana Pacers, as he had intended. #fail During this entire time, he always loved helping students, especially if they were struggling with organic chemistry. In 2006, Dr. Pali founded AceOrganicChem.com in order to make learning organic chemistry fast and easy. 14 years and about 60,000 students later we are still helping students to learn organic chemistry one reaction at a time at https://www.aceorganicchem.com